Code Ocean Apps

Code Ocean Apps is the dashboard where ready-to-use applications are available. These Apps can be used with or without customization and are regularly updated and added by the Science team.

The library consists of:

1. Genomics

   • Bulk Sequencing

   • Single Cell

   • Utilities

   • Other

2. Cheminformatics

3. Visualization

4. Machine Learning

5. Data Connectors

6. Quality Control

NOTE: This dashboard has replaced the Open Science Library dashboard

Note there are multiple RNA and DNA aligners available in the Apps Library. Much of this comes down to personal preference, or the specific purpose for exmple., Salmon is very tailored to transcript quantification. STAR might be more suitable for structural variant detection or other types of analyses of RNA-Seq data. For guidance, feel free to post on the Code Ocean community slack or contact [e-mail].