Visualization

TitleInput Data

Wally visualizations

  • Genome fasta reference and fai file

  • .bam files

Dose response

  • .csv file containing gene expression and treatment dosage (see README for details)

DESeq2

  • Input varies depending on the source (i.e., Seurat vs RSEM) see README for details.

Mol* Viewer for PDB Files

  • Protein structure files in .pdb format

TensorBoard GPU

  • None

RShiny Cell

  • Single cell .rds inputs from Seurat (see README)

1-3. Single Cell Analysis Tutorial (Scanpy & Seurat)

  • Tutorial datasets (see README for details)

5-6. Single Cell Analysis Tutorial (Scanpy)

  • Tutorial datasets (see README for details)

7-10. Single Cell Analysis Tutorial (Scanpy) Advanced

  • Tutorial datasets (see README for details)

MLflow Orchestrator Capsule

  • None

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