Collections

Collections are composed of Capsule, Pipelines, No-code Apps, and Data Assets, organized by Administrator-defined topics. They allow for better asset management at the organization level, increased discoverability, and re-use of “Gold Standard” assets.

Collections have their own dashboard, available from the Navigation sidebar.

On the Collections page, you are able to view all Collections created by your Code Ocean Admin, which could correspond to categories such as projects or data type.

Adding Assets to Collections

You can add any Release Capsules/Pipelines, No-Code Apps, and Data Assets that you are the owner of. This can be done by first using the file tree to select the collection you would like to add to

In the top right corner, the “Add Asset” button can be used to add assets of your choice to the Collection

Users will then be prompted to provide the URL of the asset (Pipeline, No-Code App, Released Capsule, or Data Asset). In this example, we will be adding the release Capsule DESeq2 to the Genomics Collection.

Once this is done, you can see the asset in the collection you created under the relevant section.

To delete this asset from the collection, hover over the asset and click the trash can icon.