Quality Control
Logo | Title | Description | Input Data |
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FastQC | FastQC is a quality control tool for high throughput sequence data. FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. |
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MultiQC | This Capsule aggregates results from bioinformatics analyses across many samples into a single report. |
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TensorBoard GPU | View model experiment metrics like loss and accuracy, visualizing the model graph, project embeddings to a lower dimensional space and more. This Capsule shows an example from the Tensorboard website. This Capsule runs on GPU instances and comes preloaded with Tensorflow. |
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fastp | A tool designed to provide fast all-in-one preprocessing for FastQ files (adapter trimming, downsampling etc.). This tool is developed in C++ with multithreading supported to afford high performance |
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Trim Galore | Trim Galore is a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data |
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